Faithful Density-Peaks Clustering via Matrix Computations on MPI Parallelization System

Density peaks clustering (DP) has the ability of detecting clusters of arbitrary shape and clustering non-Euclidean space data, but its O(n 2) complexity in both computing and storage makes it difficult to scale for big data. Various approaches have been proposed in this regard, including MapReduce based distribution computing, multi-core parallelism, presentation transformation (e.g., kd-tree, Z-value), granular computing, and so forth. However, most of these existing methods face two limitations. One is their target datasets are mostly constrained to be in Euclidian space, the other is they emphasize only on local neighbors while ignoring global data distribution due to restriction to cutoff kernel when computing density. To address the two issues, we present a faithful and parallel DP method that makes use of two types of vector-like distance matrices and an inverse leading-node-finding policy. The method is implemented on a message passing interface (MPI) system. Extensive experiments showed that our method is capable of clustering non-Euclidean data such as in community detection, while outperforming the state-of-the-art counterpart methods in accuracy when clustering large Euclidean data. Our code is publicly available at https://github.com/alanxuji/FaithPDP.