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Model Context Protocol in Enterprise AI Systems: Architecture, Failure Modes, and Production Patterns

  • Zenodo (CERN European Organization for Nuclear Research)
  • European Organization for Nuclear Research
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Abstract

Large Language Model (LLM) agent systems have rapidly transitioned from experimental prototypes to production-grade infrastructure in enterprise environments. However, the practical challenges of deploying these systems at scale — including tool invocation reliability, context management, backend service integration, and security boundary enforcement — remain underexplored in the literature. This paper presents an architectural analysis of enterprise LLM agent systems built around the Model Context Protocol (MCP), drawing from production experience designing and deploying such systems at MasTec, Inc. We characterize seven distinct failure modes that emerge in production MCP-based agent deployments, describe architectural patterns that mitigate them, and propose a framework for evaluating agent system reliability in enterprise settings. Our findings demonstrate that MCP, when combined with structured tool-calling pipelines, retrieval-augmented generation (RAG), and agent memory systems, provides a robust foundation for enterprise AI automation, with measurable improvements in API latency and task completion rates.

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Publication details

DOI
10.5281/zenodo.19648078
OpenAlex
W7154907023
Document type
preprint
Language
EN
Source
Zenodo (CERN European Organization for Nuclear Research)
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