Karel Břinda

FroM Superstring to Indexing: a space-efficient index for unconstrained <i>k</i> -mer sets using the Masked Burrows-Wheeler Transform (MBWT)

2024 · bioRxiv (Cold Spring Harbor Laboratory)

Abstract The growing volumes and heterogeneity of genomic data call for scalable and versatile k -mer-set indexes. However, state-of-the-art indexes such as Spectral Burrows-Wheeler Transform (SBWT) and SSHash depend on long non-branching paths in de …