Yun Xu

CCAligner

2018

Copying code and then pasting with large number of edits is a common activity in software development, and the pasted code is a kind of complicated Type-3 clone. Due to large number of edits, we …

DNA sequences alignment method using sparse index on pan-genome graph

2024 · Journal of Bioinformatics and Computational Biology

The graph of sequences represents the genetic variations of pan-genome concisely and space-efficiently than multiple linear reference genome. In order to accelerate aligning reads to the graph, an index of graph-based reference genomes is used …